Experimental protocols and bioinformatic pipelines for mumps genome sequencing

Louise Moncla¹, Allison Black^1,2, Trevor Bedford¹

¹Department of Epidemiology, University of Washington, Seattle, WA, USA, ²Vaccine and Infectious Disease Division, Fred Hutchinson Cancer Research Center, Seattle, WA, USA

• Protocols for Illumina sequencing full genomes from buccal swabs
• Bioinformatic pipeline for generating consensus genome sequences from raw Illumina fastq files
• Data

Citation

Moncla et al. 2021. Repeated introductions and intensive community transmission fueled a mumps virus outbreak in Washington State. eLife 10: e66448.